IL_9Q2T_209

3D structure

PDB id

9Q2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2T_209 not in the Motif Atlas

Geometric match to IL_8GLP_220

Geometric discrepancy: 0.2764

The information below is about IL_8GLP_220

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

43

Unit IDs

9Q2T|1|9|U|566
9Q2T|1|9|C|567
9Q2T|1|9|C|568
9Q2T|1|9|A|569
*
9Q2T|1|9|U|581
9Q2T|1|9|U|582
9Q2T|1|9|A|583
9Q2T|1|9|A|584

Current chains

Chain 9

18S rRNA

Nearby chains

Chain JJ

40S ribosomal protein S9

Chain YY

40S ribosomal protein S24