IL_9Q2T_222

3D structure

PDB id

9Q2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2T_222 not in the Motif Atlas

Geometric match to IL_1YZ9_002

Geometric discrepancy: 0.162

The information below is about IL_1YZ9_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9Q2T|1|9|G|874
9Q2T|1|9|A|875
9Q2T|1|9|C|876
*
9Q2T|1|9|G|910
9Q2T|1|9|C|911
9Q2T|1|9|C|912

Current chains

Chain 9

18S rRNA

Nearby chains

Chain HH

Small ribosomal subunit protein eS7

Chain LL

Small ribosomal subunit protein uS17

Chain R

60S ribosomal protein L19