IL_9Q2T_237

3D structure

PDB id

9Q2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

9Q2T|1|9|C|1215, 9Q2T|1|9|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2T|1|9|A|1214
9Q2T|1|9|C|1215
9Q2T|1|9|C|1216
9Q2T|1|9|A|1217
*
9Q2T|1|9|U|1681
9Q2T|1|9|C|1682
9Q2T|1|9|C|1683
9Q2T|1|9|C|1684
9Q2T|1|9|U|1685

Current chains

Chain 9

18S rRNA

Nearby chains

Chain FF

Small ribosomal subunit protein uS7

Chain QQ

Small ribosomal subunit protein uS9

Chain cc

40S ribosomal protein S28