IL_9Q3Q_010

3D structure

PDB id

9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.01 Å

Loop

Sequence

UAG*CAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q3Q_010 not in the Motif Atlas

Homologous match to IL_8B0X_074

Geometric discrepancy: 0.0493

The information below is about IL_8B0X_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76658.1

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

4

Unit IDs

9Q3Q|1|A|U|293
9Q3Q|1|A|A|294
9Q3Q|1|A|G|295
*
9Q3Q|1|A|C|343
9Q3Q|1|A|A|344
9Q3Q|1|A|A|345
9Q3Q|1|A|A|346
9Q3Q|1|A|A|347

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L24