IL_9Q3Q_056

3D structure

PDB id

9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.01 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q3Q_056 not in the Motif Atlas

Homologous match to IL_8B0X_119

Geometric discrepancy: 0.1407

The information below is about IL_8B0X_119

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

tSH-tWH-tHS

Motif group

IL_38862.5

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9Q3Q|1|A|U|1474
9Q3Q|1|A|G|1475
9Q3Q|1|A|U|1476
9Q3Q|1|A|A|1477
9Q3Q|1|A|G|1478
*
9Q3Q|1|A|U|1513
9Q3Q|1|A|G|1514
9Q3Q|1|A|A|1515
9Q3Q|1|A|G|1516
9Q3Q|1|A|G|1517

Current chains

Chain A

23S Ribosomal RNA

Nearby chains