IL_9Q3Q_066

3D structure

PDB id

9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.01 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

9Q3Q|1|A|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q3Q_066 not in the Motif Atlas

Homologous match to IL_8B0X_128

Geometric discrepancy: 0.0646

The information below is about IL_8B0X_128

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9Q3Q|1|A|U|1712
9Q3Q|1|A|A|1713
9Q3Q|1|A|U|1714
9Q3Q|1|A|G|1715
9Q3Q|1|A|U|1716
9Q3Q|1|A|A|1717
9Q3Q|1|A|G|1718
*
9Q3Q|1|A|U|1742
9Q3Q|1|A|G|1743
9Q3Q|1|A|A|1744
9Q3Q|1|A|A|1745
9Q3Q|1|A|A|1746

Current chains

Chain A

23S Ribosomal RNA

Nearby chains