IL_9Q3Q_074

3D structure

PDB id

9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.01 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q3Q_074 not in the Motif Atlas

Homologous match to IL_8B0X_181

Geometric discrepancy: 0.0676

The information below is about IL_8B0X_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q3Q|1|A|U|1851
9Q3Q|1|A|U|1852
9Q3Q|1|A|A|1853
9Q3Q|1|A|A|1854
9Q3Q|1|A|U|1855
9Q3Q|1|A|U|1856
9Q3Q|1|A|G|1857
9Q3Q|1|A|A|1858
9Q3Q|1|A|U|1859
9Q3Q|1|A|G|1860
*
9Q3Q|1|A|U|1882
9Q3Q|1|A|U|1883
9Q3Q|1|A|G|1884
9Q3Q|1|A|A|1885
9Q3Q|1|A|U|1886
9Q3Q|1|A|C|1887
9Q3Q|1|A|G|1888
9Q3Q|1|A|A|1889
9Q3Q|1|A|A|1890
9Q3Q|1|A|G|1891

Current chains

Chain A

23S Ribosomal RNA

Nearby chains