IL_9Q3Q_081
3D structure
- PDB id
- 9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.01 Å
Loop
- Sequence
- AA*UACU
- Length
- 6 nucleotides
- Bulged bases
- 9Q3Q|1|A|A|2439
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q3Q_081 not in the Motif Atlas
- Homologous match to IL_8B0X_143
- Geometric discrepancy: 0.0596
- The information below is about IL_8B0X_143
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_98469.1
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 37
Unit IDs
9Q3Q|1|A|A|2070
9Q3Q|1|A|A|2071
*
9Q3Q|1|A|U|2438
9Q3Q|1|A|A|2439
9Q3Q|1|A|C|2440
9Q3Q|1|A|U|2441
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain x
- Transfer RNA; tRNA
- Chain y
- QKF peptide
Coloring options: