IL_9Q3Q_116
3D structure
- PDB id
- 9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.01 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q3Q_116 not in the Motif Atlas
- Homologous match to IL_8B0X_175
- Geometric discrepancy: 0.0361
- The information below is about IL_8B0X_175
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_71138.1
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
9Q3Q|1|B|C|71
9Q3Q|1|B|G|72
9Q3Q|1|B|A|73
9Q3Q|1|B|U|74
9Q3Q|1|B|G|75
9Q3Q|1|B|G|76
9Q3Q|1|B|U|77
9Q3Q|1|B|A|78
9Q3Q|1|B|G|79
*
9Q3Q|1|B|C|97
9Q3Q|1|B|G|98
9Q3Q|1|B|A|99
9Q3Q|1|B|G|100
9Q3Q|1|B|A|101
9Q3Q|1|B|G|102
9Q3Q|1|B|U|103
9Q3Q|1|B|A|104
9Q3Q|1|B|G|105
Current chains
- Chain B
- 5S Ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L30
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain O
- Large ribosomal subunit protein uL16
- Chain X
- Large ribosomal subunit protein bL25
Coloring options: