IL_9Q3Q_136
3D structure
- PDB id
- 9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.01 Å
Loop
- Sequence
- UGAAGAAG*UGUAAAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q3Q_136 not in the Motif Atlas
- Homologous match to IL_8B0X_019
- Geometric discrepancy: 0.0748
- The information below is about IL_8B0X_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62329.1
- Basepair signature
- cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
- Number of instances in this motif group
- 2
Unit IDs
9Q3Q|1|a|U|409
9Q3Q|1|a|G|410
9Q3Q|1|a|A|411
9Q3Q|1|a|A|412
9Q3Q|1|a|G|413
9Q3Q|1|a|A|414
9Q3Q|1|a|A|415
9Q3Q|1|a|G|416
*
9Q3Q|1|a|U|427
9Q3Q|1|a|G|428
9Q3Q|1|a|U|429
9Q3Q|1|a|A|430
9Q3Q|1|a|A|431
9Q3Q|1|a|A|432
9Q3Q|1|a|G|433
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain d
- Small ribosomal subunit protein uS4
Coloring options: