IL_9Q3Q_140
3D structure
- PDB id
- 9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.01 Å
Loop
- Sequence
- CGGCUAAC*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q3Q_140 not in the Motif Atlas
- Homologous match to IL_8B0X_023
- Geometric discrepancy: 0.0701
- The information below is about IL_8B0X_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_11411.3
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
9Q3Q|1|a|C|504
9Q3Q|1|a|G|505
9Q3Q|1|a|G|506
9Q3Q|1|a|C|507
9Q3Q|1|a|U|508
9Q3Q|1|a|A|509
9Q3Q|1|a|A|510
9Q3Q|1|a|C|511
*
9Q3Q|1|a|G|540
9Q3Q|1|a|G|541
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain d
- Small ribosomal subunit protein uS4
- Chain l
- Small ribosomal subunit protein uS12
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