IL_9Q3Q_141
3D structure
- PDB id
- 9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.01 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 9Q3Q|1|a|A|532, 9Q3Q|1|a|U|534, 9Q3Q|1|a|A|535
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q3Q_141 not in the Motif Atlas
- Homologous match to IL_8B0X_024
- Geometric discrepancy: 0.1653
- The information below is about IL_8B0X_024
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.3
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9Q3Q|1|a|G|515
9Q3Q|1|a|PSU|516
9Q3Q|1|a|G|517
9Q3Q|1|a|C|518
9Q3Q|1|a|C|519
9Q3Q|1|a|A|520
9Q3Q|1|a|G|521
*
9Q3Q|1|a|C|528
9Q3Q|1|a|G|529
9Q3Q|1|a|G|530
9Q3Q|1|a|U|531
9Q3Q|1|a|A|532
9Q3Q|1|a|A|533
9Q3Q|1|a|U|534
9Q3Q|1|a|A|535
9Q3Q|1|a|C|536
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain c
- Small ribosomal subunit protein uS3
- Chain d
- Small ribosomal subunit protein uS4
- Chain l
- Small ribosomal subunit protein uS12
- Chain v
- dapG mRNA
- Chain w
- Transfer RNA; tRNA
Coloring options: