IL_9Q3R_006
3D structure
- PDB id
- 9Q3R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- GGAACUG*CUAAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q3R_006 not in the Motif Atlas
- Homologous match to IL_8B0X_070
- Geometric discrepancy: 0.0334
- The information below is about IL_8B0X_070
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.5
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9Q3R|1|A|G|188
9Q3R|1|A|G|189
9Q3R|1|A|A|190
9Q3R|1|A|A|191
9Q3R|1|A|C|192
9Q3R|1|A|U|193
9Q3R|1|A|G|194
*
9Q3R|1|A|C|201
9Q3R|1|A|U|202
9Q3R|1|A|A|203
9Q3R|1|A|A|204
9Q3R|1|A|G|205
9Q3R|1|A|U|206
9Q3R|1|A|A|207
9Q3R|1|A|C|208
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 7
- 50S ribosomal protein L35
- Chain N
- 50S ribosomal protein L15
- Chain Z
- 50S ribosomal protein L28
Coloring options: