IL_9Q3R_013
3D structure
- PDB id
- 9Q3R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- CCU*AUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q3R_013 not in the Motif Atlas
- Homologous match to IL_8B0X_077
- Geometric discrepancy: 0.0429
- The information below is about IL_8B0X_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_01334.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 23
Unit IDs
9Q3R|1|A|C|564
9Q3R|1|A|C|565
9Q3R|1|A|U|566
*
9Q3R|1|A|A|575
9Q3R|1|A|U|576
9Q3R|1|A|G|577
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L32
- Chain E
- Large ribosomal subunit protein uL4
- Chain N
- 50S ribosomal protein L15
- Chain S
- 50S ribosomal protein L20
- Chain T
- Ribosomal protein L21
Coloring options: