IL_9Q3R_039
3D structure
- PDB id
- 9Q3R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- GAAG*CGGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q3R_039 not in the Motif Atlas
- Homologous match to IL_8B0X_103
- Geometric discrepancy: 0.1088
- The information below is about IL_8B0X_103
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 38
Unit IDs
9Q3R|1|A|G|1038
9Q3R|1|A|A|1039
9Q3R|1|A|A|1040
9Q3R|1|A|G|1041
*
9Q3R|1|A|C|1114
9Q3R|1|A|G|1115
9Q3R|1|A|G|1116
9Q3R|1|A|C|1117
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain G
- Large ribosomal subunit protein uL6
- Chain O
- Large ribosomal subunit protein uL16
- Chain X
- Large ribosomal subunit protein bL25
Coloring options: