IL_9Q3R_041

3D structure

PDB id

9Q3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

AUGUUGGCU*GCCAUCAU

Length

17 nucleotides

Bulged bases

9Q3R|1|A|U|1061, 9Q3R|1|A|U|1078

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q3R|1|A|A|1057
9Q3R|1|A|U|1058
9Q3R|1|A|G|1059
9Q3R|1|A|U|1060
9Q3R|1|A|U|1061
9Q3R|1|A|G|1062
9Q3R|1|A|G|1063
9Q3R|1|A|C|1064
9Q3R|1|A|U|1065
*
9Q3R|1|A|G|1074
9Q3R|1|A|C|1075
9Q3R|1|A|C|1076
9Q3R|1|A|A|1077
9Q3R|1|A|U|1078
9Q3R|1|A|C|1079
9Q3R|1|A|A|1080
9Q3R|1|A|U|1081

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L11

Chain O

Large ribosomal subunit protein uL16