IL_9Q3R_056

3D structure

PDB id

9Q3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

9Q3R|1|A|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q3R_056 not in the Motif Atlas

Homologous match to IL_8B0X_118

Geometric discrepancy: 0.0914

The information below is about IL_8B0X_118

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.5

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9Q3R|1|A|U|1468
9Q3R|1|A|A|1469
9Q3R|1|A|A|1470
9Q3R|1|A|G|1471
*
9Q3R|1|A|U|1520
9Q3R|1|A|G|1521
9Q3R|1|A|A|1522
9Q3R|1|A|U|1523
9Q3R|1|A|G|1524

Current chains

Chain A

23S Ribosomal RNA

Nearby chains