IL_9Q3R_064
3D structure
- PDB id
- 9Q3R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- GGAACUAGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q3R_064 not in the Motif Atlas
- Geometric match to IL_8B0X_180
- Geometric discrepancy: 0.0285
- The information below is about IL_8B0X_180
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.3
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 11
Unit IDs
9Q3R|1|A|G|1666
9Q3R|1|A|G|1667
9Q3R|1|A|A|1668
9Q3R|1|A|A|1669
9Q3R|1|A|C|1670
9Q3R|1|A|U|1671
9Q3R|1|A|A|1672
9Q3R|1|A|G|1673
9Q3R|1|A|G|1674
*
9Q3R|1|A|C|1990
9Q3R|1|A|U|1991
9Q3R|1|A|G|1992
9Q3R|1|A|U|1993
9Q3R|1|A|C|1994
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain M
- Large ribosomal subunit protein uL14
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