IL_9Q3R_130
3D structure
- PDB id
- 9Q3R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- GAUUAG*CGACGAUC
- Length
- 14 nucleotides
- Bulged bases
- 9Q3R|1|a|U|244, 9Q3R|1|a|C|280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q3R_130 not in the Motif Atlas
- Homologous match to IL_8B0X_013
- Geometric discrepancy: 0.0669
- The information below is about IL_8B0X_013
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.6
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9Q3R|1|a|G|242
9Q3R|1|a|A|243
9Q3R|1|a|U|244
9Q3R|1|a|U|245
9Q3R|1|a|A|246
9Q3R|1|a|G|247
*
9Q3R|1|a|C|277
9Q3R|1|a|G|278
9Q3R|1|a|A|279
9Q3R|1|a|C|280
9Q3R|1|a|G|281
9Q3R|1|a|A|282
9Q3R|1|a|U|283
9Q3R|1|a|C|284
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain l
- Small ribosomal subunit protein uS12
- Chain q
- Small ribosomal subunit protein uS17
Coloring options: