IL_9Q3R_139

3D structure

PDB id

9Q3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q3R_139 not in the Motif Atlas

Homologous match to IL_8B0X_022

Geometric discrepancy: 0.0983

The information below is about IL_8B0X_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q3R|1|a|G|450
9Q3R|1|a|A|451
9Q3R|1|a|A|452
9Q3R|1|a|G|453
9Q3R|1|a|G|454
9Q3R|1|a|G|455
*
9Q3R|1|a|C|477
9Q3R|1|a|A|478
9Q3R|1|a|U|479
9Q3R|1|a|U|480
9Q3R|1|a|G|481
9Q3R|1|a|A|482
9Q3R|1|a|C|483

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain p

Small ribosomal subunit protein bS16