IL_9Q6Q_055

3D structure

PDB id

9Q6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-18 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UAG*CAGG

Length

7 nucleotides

Bulged bases

9Q6Q|1|1A|G|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q6Q_055 not in the Motif Atlas

Homologous match to IL_7A0S_052

Geometric discrepancy: 0.4505

The information below is about IL_7A0S_052

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_75737.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

8

Unit IDs

9Q6Q|1|1A|U|1433
9Q6Q|1|1A|A|1434
9Q6Q|1|1A|G|1435
*
9Q6Q|1|1A|C|1557
9Q6Q|1|1A|A|1558
9Q6Q|1|1A|G|1559
9Q6Q|1|1A|G|1560

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains