IL_9Q6Q_087

3D structure

PDB id

9Q6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-18 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

9Q6Q|1|1A|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q6Q_087 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.5425

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.4

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

31

Unit IDs

9Q6Q|1|1A|C|2129
9Q6Q|1|1A|U|2130
9Q6Q|1|1A|G|2131
9Q6Q|1|1A|U|2132
9Q6Q|1|1A|G|2133
9Q6Q|1|1A|A|2134
9Q6Q|1|1A|A|2135
9Q6Q|1|1A|C|2136
*
9Q6Q|1|1A|G|2155
9Q6Q|1|1A|G|2156
9Q6Q|1|1A|G|2157
9Q6Q|1|1A|A|2158
9Q6Q|1|1A|G|2159

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains