IL_9Q6Q_307

3D structure

PDB id

9Q6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-18 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

9Q6Q|1|2a|A|532, 9Q6Q|1|2a|U|534, 9Q6Q|1|2a|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q6Q_307 not in the Motif Atlas

Homologous match to IL_8B0X_024

Geometric discrepancy: 0.197

The information below is about IL_8B0X_024

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_52042.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9Q6Q|1|2a|G|515
9Q6Q|1|2a|PSU|516
9Q6Q|1|2a|G|517
9Q6Q|1|2a|C|518
9Q6Q|1|2a|C|519
9Q6Q|1|2a|A|520
9Q6Q|1|2a|G|521
*
9Q6Q|1|2a|C|528
9Q6Q|1|2a|G|529
9Q6Q|1|2a|G|530
9Q6Q|1|2a|U|531
9Q6Q|1|2a|A|532
9Q6Q|1|2a|A|533
9Q6Q|1|2a|U|534
9Q6Q|1|2a|A|535
9Q6Q|1|2a|C|536

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12

Chain 2y

Ribosome-associated inhibitor A