IL_9Q6R_042

3D structure

PDB id

9Q6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-27 triazole derivative and protein Y at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

9Q6R|1|1A|A|1088

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q6R_042 not in the Motif Atlas

Homologous match to IL_1MMS_004

Geometric discrepancy: 0.155

The information below is about IL_1MMS_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.5

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

29

Unit IDs

9Q6R|1|1A|G|1087
9Q6R|1|1A|A|1088
9Q6R|1|1A|G|1089
9Q6R|1|1A|U|1090
9Q6R|1|1A|G|1091
*
9Q6R|1|1A|C|1100
9Q6R|1|1A|U|1101
9Q6R|1|1A|C|1102

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1Q

50S ribosomal protein L16