IL_9Q6R_198

3D structure

PDB id

9Q6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-27 triazole derivative and protein Y at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

9Q6R|1|2A|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q6R_198 not in the Motif Atlas

Geometric match to IL_9DFE_024

Geometric discrepancy: 0.0729

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

9Q6R|1|2A|C|844
9Q6R|1|2A|G|845
9Q6R|1|2A|C|846
9Q6R|1|2A|U|847
9Q6R|1|2A|G|848
9Q6R|1|2A|A|849
9Q6R|1|2A|C|850
*
9Q6R|1|2A|G|927
9Q6R|1|2A|G|928
9Q6R|1|2A|U|930
9Q6R|1|2A|G|931
9Q6R|1|2A|G|932
9Q6R|1|2A|A|933
9Q6R|1|2A|G|934

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 1P

50S ribosomal protein L15

Chain 23

50S ribosomal protein L30