IL_9Q6R_258

3D structure

PDB id

9Q6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-27 triazole derivative and protein Y at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q6R_258 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.2916

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

9Q6R|1|2A|G|2124
9Q6R|1|2A|G|2125
9Q6R|1|2A|A|2126
9Q6R|1|2A|G|2127
*
9Q6R|1|2A|C|2161
9Q6R|1|2A|G|2162
9Q6R|1|2A|C|2163
9Q6R|1|2A|C|2164
9Q6R|1|2A|G|2165
9Q6R|1|2A|G|2166
9Q6R|1|2A|U|2167
9Q6R|1|2A|G|2168
9Q6R|1|2A|A|2169
9Q6R|1|2A|A|2170
9Q6R|1|2A|A|2171
9Q6R|1|2A|U|2172
9Q6R|1|2A|A|2173
9Q6R|1|2A|C|2174

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains