IL_9Q6S_241

3D structure

PDB id

9Q6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-30 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

9Q6S|1|2A|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q6S_241 not in the Motif Atlas

Homologous match to IL_8B0X_127

Geometric discrepancy: 0.0643

The information below is about IL_8B0X_127

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20700.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

12

Unit IDs

9Q6S|1|2A|C|1686
9Q6S|1|2A|G|1687
9Q6S|1|2A|U|1688
9Q6S|1|2A|A|1689
9Q6S|1|2A|A|1690
9Q6S|1|2A|C|1691
*
9Q6S|1|2A|G|1696
9Q6S|1|2A|G|1697
9Q6S|1|2A|A|1698
9Q6S|1|2A|G|1699
9Q6S|1|2A|A|1700
9Q6S|1|2A|A|1701
9Q6S|1|2A|G|1702

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA