IL_9Q6S_282

3D structure

PDB id

9Q6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-30 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q6S_282 not in the Motif Atlas

Homologous match to IL_8B0X_170

Geometric discrepancy: 0.092

The information below is about IL_8B0X_170

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48489.4

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

10

Unit IDs

9Q6S|1|2A|U|2847
9Q6S|1|2A|G|2848
9Q6S|1|2A|U|2849
9Q6S|1|2A|A|2850
9Q6S|1|2A|A|2851
9Q6S|1|2A|G|2852
*
9Q6S|1|2A|U|2865
9Q6S|1|2A|U|2866
9Q6S|1|2A|G|2867
9Q6S|1|2A|A|2868
9Q6S|1|2A|G|2869

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2R

50S ribosomal protein L17

Chain 2T

50S ribosomal protein L19