IL_8B0X_170

3D structure

PDB id

8B0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 70S ribosome in the unrotated state (P and E, tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B0X_170 not in the Motif Atlas

Homologous match to IL_5J7L_354

Geometric discrepancy: 0.0424

The information below is about IL_5J7L_354

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

8B0X|1|a|U|2851
8B0X|1|a|G|2852
8B0X|1|a|U|2853
8B0X|1|a|A|2854
8B0X|1|a|A|2855
8B0X|1|a|G|2856
*
8B0X|1|a|U|2869
8B0X|1|a|U|2870
8B0X|1|a|G|2871
8B0X|1|a|A|2872
8B0X|1|a|G|2873

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L17

Chain o

50S ribosomal protein L19