IL_9Q6T_318

3D structure

PDB id

9Q6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin and protein Y at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

9Q6T|1|2a|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q6T_318 not in the Motif Atlas

Geometric match to IL_4LFB_031

Geometric discrepancy: 0.097

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

9Q6T|1|2a|G|683
9Q6T|1|2a|A|684
9Q6T|1|2a|G|685
9Q6T|1|2a|U|686
9Q6T|1|2a|A|687
9Q6T|1|2a|G|688
*
9Q6T|1|2a|C|699
9Q6T|1|2a|G|700
9Q6T|1|2a|C|701
9Q6T|1|2a|A|702
9Q6T|1|2a|G|703
9Q6T|1|2a|A|704
9Q6T|1|2a|U|705
9Q6T|1|2a|A|706
9Q6T|1|2a|C|707

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2k

30S ribosomal protein S11