IL_9Q6V_244

3D structure

PDB id

9Q6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin-31 triazole derivative and protein Y at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

9Q6V|1|2A|G|1801, 9Q6V|1|2A|G|1816, 9Q6V|1|2A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q6V_244 not in the Motif Atlas

Homologous match to IL_8B0X_132

Geometric discrepancy: 0.1432

The information below is about IL_8B0X_132

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9Q6V|1|2A|U|1798
9Q6V|1|2A|G|1799
9Q6V|1|2A|C|1800
9Q6V|1|2A|G|1801
9Q6V|1|2A|A|1802
9Q6V|1|2A|A|1803
9Q6V|1|2A|C|1804
*
9Q6V|1|2A|G|1813
9Q6V|1|2A|G|1814
9Q6V|1|2A|A|1815
9Q6V|1|2A|G|1816
9Q6V|1|2A|G|1817
9Q6V|1|2A|U|1818
9Q6V|1|2A|A|1819
9Q6V|1|2A|U|1820
9Q6V|1|2A|A|1821

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA