IL_9Q7Q_176
3D structure
- PDB id
- 9Q7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- ABCE1-eRF1-RNC-AMD1C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 9Q7Q|1|K|U|361, 9Q7Q|1|K|C|399, 9Q7Q|1|K|C|400
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q7Q_176 not in the Motif Atlas
- Homologous match to IL_9PN5_159
- Geometric discrepancy: 0.1084
- The information below is about IL_9PN5_159
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.7
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 8
Unit IDs
9Q7Q|1|K|U|359
9Q7Q|1|K|A|360
9Q7Q|1|K|U|361
9Q7Q|1|K|C|362
9Q7Q|1|K|A|363
9Q7Q|1|K|A|364
*
9Q7Q|1|K|U|396
9Q7Q|1|K|G|397
9Q7Q|1|K|A|398
9Q7Q|1|K|C|399
9Q7Q|1|K|C|400
9Q7Q|1|K|A|401
9Q7Q|1|K|C|402
9Q7Q|1|K|G|403
Current chains
- Chain K
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain CC
- eS8
- Chain EE
- Ribosomal protein S11
- Chain VV
- uS12
Coloring options: