IL_9Q87_012

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9Q87|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q87_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.0931

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

9Q87|1|A|G|147
9Q87|1|A|G|148
9Q87|1|A|A|149
9Q87|1|A|U|150
9Q87|1|A|A|151
9Q87|1|A|A|152
9Q87|1|A|C|153
*
9Q87|1|A|G|168
9Q87|1|A|C|169
9Q87|1|A|U|170
9Q87|1|A|A|171
9Q87|1|A|A|172
9Q87|1|A|U|173
9Q87|1|A|A|174
9Q87|1|A|C|175

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20