IL_9Q87_050

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

9Q87|1|A|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q87_050 not in the Motif Atlas

Homologous match to IL_5J7L_051

Geometric discrepancy: 0.104

The information below is about IL_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06691.1

Basepair signature

cWW-cWS-L-R-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

9Q87|1|A|G|1124
9Q87|1|A|U|1125
9Q87|1|A|U|1126
9Q87|1|A|G|1127
9Q87|1|A|C|1128
*
9Q87|1|A|G|1144
9Q87|1|A|A|1145
9Q87|1|A|A|1146
9Q87|1|A|C|1147
9Q87|1|A|U|1148
9Q87|1|A|C|1149

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9

Chain J

Small ribosomal subunit protein uS10