IL_9Q87_105
3D structure
- PDB id
- 9Q87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.55 Å
Loop
- Sequence
- GAAG*CGGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q87_105 not in the Motif Atlas
- Homologous match to IL_5J7L_283
- Geometric discrepancy: 0.0848
- The information below is about IL_5J7L_283
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
9Q87|1|a|G|1040
9Q87|1|a|A|1041
9Q87|1|a|A|1042
9Q87|1|a|G|1043
*
9Q87|1|a|C|1116
9Q87|1|a|G|1117
9Q87|1|a|G|1118
9Q87|1|a|C|1119
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL36
- Chain g
- Large ribosomal subunit protein uL6
- Chain l
- Large ribosomal subunit protein uL16
- Chain u
- Large ribosomal subunit protein bL25
Coloring options: