IL_9Q87_106
3D structure
- PDB id
- 9Q87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.55 Å
Loop
- Sequence
- CCCAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 9Q87|1|a|A|1048
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q87_106 not in the Motif Atlas
- Homologous match to IL_5J7L_284
- Geometric discrepancy: 0.1265
- The information below is about IL_5J7L_284
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
9Q87|1|a|C|1045
9Q87|1|a|C|1046
9Q87|1|a|C|1047
9Q87|1|a|A|1048
9Q87|1|a|G|1049
9Q87|1|a|A|1050
9Q87|1|a|C|1051
9Q87|1|a|A|1052
9Q87|1|a|G|1053
*
9Q87|1|a|U|1110
9Q87|1|a|C|1111
9Q87|1|a|G|1112
9Q87|1|a|A|1113
9Q87|1|a|G|1114
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain g
- Large ribosomal subunit protein uL6
Coloring options: