IL_9Q87_110

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9Q87|1|a|U|1213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q87_110 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0485

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9Q87|1|a|C|1210
9Q87|1|a|U|1211
9Q87|1|a|G|1212
9Q87|1|a|U|1213
9Q87|1|a|G|1214
9Q87|1|a|A|1215
9Q87|1|a|A|1216
9Q87|1|a|G|1217
*
9Q87|1|a|U|1236
9Q87|1|a|G|1237
9Q87|1|a|G|1238
9Q87|1|a|A|1239
9Q87|1|a|G|1240

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein bL20