IL_9Q87_119

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

9Q87|1|a|U|1556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q87_119 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.0474

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9Q87|1|a|C|1439
9Q87|1|a|U|1440
9Q87|1|a|A|1441
9Q87|1|a|U|1442
*
9Q87|1|a|A|1553
9Q87|1|a|A|1554
9Q87|1|a|A|1555
9Q87|1|a|U|1556
9Q87|1|a|G|1557

Current chains

Chain a

23S rRNA

Nearby chains