IL_9Q87_125

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

CGAG*UGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q87_125 not in the Motif Atlas

Homologous match to IL_5J7L_303

Geometric discrepancy: 0.0971

The information below is about IL_5J7L_303

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9Q87|1|a|C|1528
9Q87|1|a|G|1529
9Q87|1|a|A|1530
9Q87|1|a|G|1531
*
9Q87|1|a|U|1544
9Q87|1|a|G|1545
9Q87|1|a|A|1546
9Q87|1|a|A|1547
9Q87|1|a|G|1548

Current chains

Chain a

23S rRNA

Nearby chains