IL_9Q87_140

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q87_140 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0533

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9Q87|1|a|U|1853
9Q87|1|a|U|1854
9Q87|1|a|A|1855
9Q87|1|a|A|1856
9Q87|1|a|U|1857
9Q87|1|a|U|1858
9Q87|1|a|G|1859
9Q87|1|a|A|1860
9Q87|1|a|U|1861
9Q87|1|a|G|1862
*
9Q87|1|a|U|1886
9Q87|1|a|U|1887
9Q87|1|a|G|1888
9Q87|1|a|A|1889
9Q87|1|a|U|1890
9Q87|1|a|C|1891
9Q87|1|a|G|1892
9Q87|1|a|A|1893
9Q87|1|a|A|1894
9Q87|1|a|G|1895

Current chains

Chain a

23S rRNA

Nearby chains