IL_9Q87_154

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

GUGGAC*GUCUGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q87_154 not in the Motif Atlas

Geometric match to IL_1L9A_008

Geometric discrepancy: 0.3529

The information below is about IL_1L9A_008

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_71294.3

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

9Q87|1|a|G|2142
9Q87|1|a|U|2143
9Q87|1|a|G|2144
9Q87|1|a|G|2145
9Q87|1|a|A|2146
9Q87|1|a|C|2147
*
9Q87|1|a|G|2152
9Q87|1|a|U|2153
9Q87|1|a|C|2154
9Q87|1|a|U|2155
9Q87|1|a|G|2156
9Q87|1|a|C|2157

Current chains

Chain a

23S rRNA

Nearby chains

Chain K

Small ribosomal subunit protein uS11