IL_9Q87_170

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q87_170 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.0602

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9Q87|1|a|C|2656
9Q87|1|a|U|2657
9Q87|1|a|A|2658
9Q87|1|a|G|2659
9Q87|1|a|U|2660
9Q87|1|a|A|2661
9Q87|1|a|C|2662
*
9Q87|1|a|G|2667
9Q87|1|a|G|2668
9Q87|1|a|A|2669
9Q87|1|a|C|2670
9Q87|1|a|C|2671
9Q87|1|a|G|2672

Current chains

Chain a

23S rRNA

Nearby chains

Chain g

Large ribosomal subunit protein uL6