IL_9Q87_184
3D structure
- PDB id
- 9Q87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.55 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q87_184 not in the Motif Atlas
- Homologous match to IL_5J7L_359
- Geometric discrepancy: 0.0456
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
9Q87|1|b|C|71
9Q87|1|b|G|72
9Q87|1|b|A|73
9Q87|1|b|U|74
9Q87|1|b|G|75
9Q87|1|b|G|76
9Q87|1|b|U|77
9Q87|1|b|A|78
9Q87|1|b|G|79
*
9Q87|1|b|C|97
9Q87|1|b|G|98
9Q87|1|b|A|99
9Q87|1|b|G|100
9Q87|1|b|A|101
9Q87|1|b|G|102
9Q87|1|b|U|103
9Q87|1|b|A|104
9Q87|1|b|G|105
Current chains
- Chain b
- 5S rRNA
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- Large ribosomal subunit protein uL16
- Chain u
- Large ribosomal subunit protein bL25
- Chain y
- Large ribosomal subunit protein uL30
Coloring options: