IL_9QEG_056

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

ACUCGG*CUGU

Length

10 nucleotides

Bulged bases

9QEG|1|A|G|2019

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_056 not in the Motif Atlas

Homologous match to IL_5J7L_307

Geometric discrepancy: 0.0515

The information below is about IL_5J7L_307

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

9QEG|1|A|A|1713
9QEG|1|A|C|1714
9QEG|1|A|U|1715
9QEG|1|A|C|1716
9QEG|1|A|G|1717
9QEG|1|A|G|1718
*
9QEG|1|A|C|2017
9QEG|1|A|U|2018
9QEG|1|A|G|2019
9QEG|1|A|U|2020

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain I

Large ribosomal subunit protein uL14