IL_9QEG_057

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

9QEG|1|A|G|1743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_057 not in the Motif Atlas

Homologous match to IL_9DFE_068

Geometric discrepancy: 0.0819

The information below is about IL_9DFE_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

9QEG|1|A|C|1730
9QEG|1|A|G|1731
9QEG|1|A|U|1732
9QEG|1|A|A|1733
9QEG|1|A|A|1734
9QEG|1|A|C|1735
*
9QEG|1|A|G|1740
9QEG|1|A|G|1741
9QEG|1|A|A|1742
9QEG|1|A|G|1743
9QEG|1|A|A|1744
9QEG|1|A|A|1745
9QEG|1|A|G|1746

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Aa

Small subunit ribosomal RNA; SSU rRNA

Chain C

Large ribosomal subunit protein uL2