IL_9QEG_062

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_062 not in the Motif Atlas

Geometric match to IL_9E6Q_011

Geometric discrepancy: 0.2894

The information below is about IL_9E6Q_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_94991.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

17

Unit IDs

9QEG|1|A|G|1873
9QEG|1|A|A|1874
9QEG|1|A|A|1875
9QEG|1|A|G|1876
*
9QEG|1|A|C|1920
9QEG|1|A|C|1921

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 11

E-site tRNA molecule

Chain Aa

Small subunit ribosomal RNA; SSU rRNA

Chain C

Large ribosomal subunit protein uL2