IL_9QEG_063

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

UUAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_063 not in the Motif Atlas

Homologous match to IL_9DFE_074

Geometric discrepancy: 0.205

The information below is about IL_9DFE_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

UAA/GAN with extra stack

Motif group

IL_89021.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9QEG|1|A|U|1878
9QEG|1|A|U|1879
9QEG|1|A|A|1880
9QEG|1|A|A|1881
9QEG|1|A|G|1882
*
9QEG|1|A|C|1914
9QEG|1|A|G|1915
9QEG|1|A|A|1916
9QEG|1|A|A|1917
9QEG|1|A|G|1918

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 11

E-site tRNA molecule