IL_9QEG_064

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

AGGAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_064 not in the Motif Atlas

Homologous match to IL_9DFE_075

Geometric discrepancy: 0.149

The information below is about IL_9DFE_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.1

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

22

Unit IDs

9QEG|1|A|A|1883
9QEG|1|A|G|1884
9QEG|1|A|G|1885
9QEG|1|A|A|1886
9QEG|1|A|G|1887
*
9QEG|1|A|C|1909
9QEG|1|A|G|1910
9QEG|1|A|A|1911
9QEG|1|A|A|1912
9QEG|1|A|U|1913

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 11

E-site tRNA molecule