IL_9QEG_079

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

9QEG|1|A|U|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_079 not in the Motif Atlas

Homologous match to IL_4WF9_092

Geometric discrepancy: 0.0797

The information below is about IL_4WF9_092

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

9QEG|1|A|A|2486
9QEG|1|A|U|2487
9QEG|1|A|C|2488
*
9QEG|1|A|G|2516
9QEG|1|A|G|2517
9QEG|1|A|U|2518
9QEG|1|A|U|2519
9QEG|1|A|U|2520

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

Large ribosomal subunit protein uL16