IL_9QEG_087

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

UUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_087 not in the Motif Atlas

Homologous match to IL_9DFE_102

Geometric discrepancy: 0.1026

The information below is about IL_9DFE_102

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.5

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9QEG|1|A|U|2679
9QEG|1|A|U|2680
9QEG|1|A|A|2681
9QEG|1|A|G|2682
9QEG|1|A|U|2683
9QEG|1|A|A|2684
9QEG|1|A|C|2685
*
9QEG|1|A|G|2690
9QEG|1|A|G|2691
9QEG|1|A|A|2692
9QEG|1|A|C|2693
9QEG|1|A|C|2694
9QEG|1|A|G|2695

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

Large ribosomal subunit protein uL6